All scripts are available at https://github.com/UCRTIMELAB

Useful 3D functions:

deriv5_3d.m

deriv7_3d.m

perfft3.m

EXAMPLE code from "In vitro formation and extended culture of highly metabolically active and contractile tissues" (DOI: 10.1371/journal.pone.0293609 )

vbam_nucalignmentquant_shell_example_v2023july5.m

vbam_nucalignmentquant_example_v2023july5.m

vbam_nucalignment_dataviz_example_v2023july5.m

vbam_nucaspectratio_dataviz_example_v2023july5.m

EXAMPLE code from "The tardigrade-derived mitochondrial abundant heat soluble protein improves adipose-derived stem cell survival against representative stressors" (DOI: https://doi.org/10.1038/s41598-024-62693-w)

Check back for more files in the future!